PEP-FOLD Peptide Structure Prediction Server - Paris Diderot …
PEP-FOLD is a de novo approach aimed at predicting peptide structures from amino acid sequences. This method, based on structural alphabet SA letters to describe the conformations of four consecutive residues, couples the predicted series of SA letters to a greedy algorithm and a coarse-grained force field.
3D View - RCSB PDB
Mol* 3D Viewer. This version of Mol* can be used to upload single or multiple data files and align structures.
RCSB PDB: Homepage
RCSB Protein Data Bank (RCSB PDB) enables breakthroughs in science and education by providing access and tools for exploration, visualization, and analysis of: Experimentally-determined 3D structures from the Protein Data Bank (PDB) archive. Computed Structure Models (CSM) from AlphaFold DB and ModelArchive.
PEP-FOLD4 Peptide Structure Prediction Server - Paris Diderot …
PEP-FOLD2 version available here is based on the greedy strategy can perform 3D modeling for linear peptides up to 36 amino acids, and allows user specified constraints such as disulfide bonds and inter-residue proximities. New Features. …
SWISS-MODEL
SWISS-MODEL is a fully automated protein structure homology-modelling server. The purpose of this server is to make protein modelling accessible to all life science researchers worldwide.
MolView
2D to 3D: converts the structural formula into a 3D model. Left toolbar. Bonds: pick one of the bond types (single, double, triple, up, down) and add or modify bonds. Fragments: pick one of the fragments (benzene, cyclopropane, etc.) and add fragments. Chain: create a …
AlphaFold Protein Structure Database
AlphaFold is an AI system developed by Google DeepMind that predicts a protein’s 3D structure from its amino acid sequence. It regularly achieves accuracy competitive with experiment.
PEP-FOLD Peptide Structure Prediction Server - Paris Diderot …
PEP-FOLD is a de novo approach aimed at predicting peptide structures from amino acid sequences. This method, based on structural alphabet SA letters to describe the conformations of four consecutive residues, couples the predicted series of SA letters to a greedy algorithm and a coarse-grained force field. What's new:
Structure Prediction - RCSB PDB
Last updated: 9/30/2024. As a member of the wwPDB, the RCSB PDB curates and annotates PDB data according to agreed upon standards. The RCSB PDB also provides a variety of tools and resources. Users can perform simple and advanced searches based on annotations relating to sequence, structure and function.
iCn3D: Web-based 3D Structure Viewer - National Center for ...
Once you see the structure neighbors, you can view the alignment in iCn3D by inputing a list of PDB chain IDs or AlphaFold UniProt IDs below. The PDB chain IDs are the same as the record names such as "1HHO_A".